{"id":367,"date":"2024-11-20T09:03:00","date_gmt":"2024-11-20T09:03:00","guid":{"rendered":"https:\/\/services.nhslothian.scot\/geneticservice\/dna-tests\/"},"modified":"2024-11-20T09:03:56","modified_gmt":"2024-11-20T09:03:56","slug":"dna-tests","status":"publish","type":"page","link":"https:\/\/services.nhslothian.scot\/geneticservice\/dna-tests\/","title":{"rendered":"DNA Tests"},"content":{"rendered":"\n<h3 class=\"wp-block-heading\">Samples for DNA extraction only<\/h3>\n\n\n\n<p>The DNA lab is happy to receive blood from any patient for DNA extraction for storage:&nbsp; DNA can be stored whether or not testing is available or considered appropriate at the time (see below).&nbsp; It is the responsibility of the referring clinician to ensure that appropriate consent has been obtained and documented.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">Postnatal DNA tests<\/h3>\n\n\n\n<p><strong>Only a restricted range of tests are available without prior discussion with Clinical Genetics:<\/strong><\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Developmental Delay\/ Fragile X syndrome<br>Angelman \/ Prader-Willi syndrome<\/h4>\n\n\n\n<p>Any paediatrician based in South-East Scotland can request tests for Angelman \/ Prader-Willi syndromes and testing for confirmed&nbsp;Developmental Delay&nbsp;,&nbsp;including Fragile X syndrome testing&nbsp;(see below).<\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Developmental delay&nbsp;<\/h4>\n\n\n\n<p>Diagnostic investigation of an abnormality in neurocognitive development is one of the most common reasons for referral to the genetic laboratory services.&nbsp; Almost all of these referrals come from paediatric services, in particular, community child health, paediatric neurology and general paediatrics.&nbsp;&nbsp;<\/p>\n\n\n\n<p>Many different terms are used to describe this common clinical presentation including learning disability, mental handicap and global developmental delay.&nbsp;&nbsp;<\/p>\n\n\n\n<p>We now offer a&nbsp;&nbsp;microarray test&nbsp;to investigate chromosomes for deletions and duplications in patients that fit our criteria (see&nbsp;<a href=\"https:\/\/services.nhslothian.scot\/geneticservice\/cytogenomic-tests\/\" data-type=\"page\" data-id=\"356\">Cytogenetic&#8217;s&nbsp;page<\/a>).&nbsp; This test&nbsp;can detect the majority of known microdeletion and microduplication syndromes including;<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>1p36 deletion<\/li>\n\n\n\n<li>2p16 microdeletion<\/li>\n\n\n\n<li>3q29 microdeletion<\/li>\n\n\n\n<li>9q22.3 microdeletion<\/li>\n\n\n\n<li>15q24 deletion<\/li>\n\n\n\n<li>17q21&nbsp;microdeletion<\/li>\n\n\n\n<li>22q13\/ Phelan-McDermid<\/li>\n\n\n\n<li>Cri du Chat, DiGeorge (22q11)<\/li>\n\n\n\n<li>DiGeorge region 2 (10p15)<\/li>\n\n\n\n<li>Langer-Giedion<\/li>\n\n\n\n<li>Miller-Dieker<\/li>\n\n\n\n<li>NF1 microdeletion<\/li>\n\n\n\n<li>Prader Willi\/ Angelman<\/li>\n\n\n\n<li>MECP2 duplication<\/li>\n\n\n\n<li>Rubinstein-Taybi<\/li>\n\n\n\n<li>Smith-Magenis<\/li>\n\n\n\n<li>Sotos<\/li>\n\n\n\n<li>WAGR<\/li>\n\n\n\n<li>Williams<\/li>\n\n\n\n<li>Wolf-Hirschhorn&nbsp;&nbsp;&nbsp;<\/li>\n<\/ul>\n\n\n\n<p>All&nbsp;requests for&nbsp;abnormal neurocognitive development testing&nbsp;should be sent&nbsp;to Cytogenetics for Microarray testing (samples will also be forwarded to Molecular department for Fragile X testing if appropriate).<\/p>\n\n\n\n<p>If a specific syndrome is suspected this should be noted on the request form.&nbsp; We also request that some indication of whether the learning disability is mild, moderate or severe is provided if possible.<\/p>\n\n\n\n<p><em>Referral to clinical genetics&nbsp;is recommended if:<\/em><em><\/em><\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>&nbsp;&nbsp;&nbsp; there is a family history of learning disability&nbsp;<em>or<\/em><\/li>\n\n\n\n<li>&nbsp;&nbsp;&nbsp; craniofacial dysmorphism&nbsp;<em>or<\/em><\/li>\n\n\n\n<li>&nbsp;&nbsp;&nbsp; associated congenital malformation&nbsp;<em>or<\/em><\/li>\n\n\n\n<li>&nbsp;&nbsp;&nbsp; significant abnormality in prenatal or postnatal growth (overgrowth, failure to thrive, micro or macrocephaly etc)&nbsp;<\/li>\n<\/ul>\n\n\n\n<p>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp;OR<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>&nbsp;&nbsp;&nbsp; suspected syndrome diagnosis that requires molecular analysis&nbsp;<em>or<\/em><\/li>\n\n\n\n<li>&nbsp;&nbsp;&nbsp; for estimation of recurrence risks<\/li>\n<\/ul>\n\n\n\n<h4 class=\"wp-block-heading\">Triplet repeat disorders<\/h4>\n\n\n\n<p>Testing for a number of distinct conditions that have a common underlying mechanism of expansion of triplet repeats (Huntington disease, spinocerebellar ataxias, myotonic dystrophy) is available to regional neurologists.&nbsp;<br>Criteria for testing, using Huntington Disease as an example, can be found on the <a href=\"https:\/\/services.nhslothian.scot\/geneticservice\/testing-symptomatic-patients-for-huntington-disease\/\" data-type=\"page\" data-id=\"370\">Testing symptomatic patients for Huntington Disease<\/a> page.<\/p>\n\n\n\n<p>Please note that referral to Clinical Genetics is required, prior to testing, in the case of a known family history of these diseases and is recommended in others.<\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Infantile Spinal Muscular Atrophy (SMA) and\/or Myotonic Dystrophy testing<\/h4>\n\n\n\n<p>A request for urgent DNA testing for infantile SMA and\/or myotonic dystrophy that is required to confirm a clinical diagnosis in a floppy baby can be submitted by any regional paediatrician.&nbsp; Other tests, e.g. for carrier status with a positive family history, should be discussed in advance with Clinical Genetics.<\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Heritable Bleeding, Platelet &amp; Thrombotic Disorders<\/h4>\n\n\n\n<p>Samples are accepted from the Scottish Haemophilia Centres and associated clinics for a number of disorders associated with heritable coagulation and platelet disorders.<br>The laboratory is a member of the UK Haemophilia Centre Doctors Organisation (UKHCDO) Genetics Laboratory Network, which provides a national network of quality genetic diagnostic services for patients families with inherited bleeding and thrombotic disorders.<br>Samples should be accompanied by a&nbsp;<a href=\"https:\/\/services.nhslothian.scot\/geneticservice\/wp-content\/uploads\/sites\/54\/2022\/08\/Molecular-Haematology-Request-Form-GENE-WM273.pdf\">Molecular Haematology request form<\/a>&nbsp;and&nbsp;<a href=\"https:\/\/services.nhslothian.scot\/geneticservice\/wp-content\/uploads\/sites\/54\/2022\/08\/UKHCDO-Genomics-Information-Sheet-and-Consent-Form.pdf\">UKHCDO genetic testing consent form<\/a>&nbsp;or a genetic lab request form, which contains the same record of discussion.<\/p>\n\n\n\n<p>Genetic testing available includes:&nbsp;<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Haemophilia A (F8)&nbsp;<\/li>\n\n\n\n<li>Haemophilia B (F9)&nbsp;<\/li>\n\n\n\n<li>von Willebrand disease (VWF)&nbsp;<\/li>\n\n\n\n<li>Fibrinogen (FGA, FGB &amp; FGG)&nbsp;<\/li>\n\n\n\n<li>Deficiencies of coagulation factors II (F2), V (F5), VII (F7), X (F10), XI (F11), XIII (F13)&nbsp;<\/li>\n\n\n\n<li>Rare causes of heritable predisposition to thrombophilia: protein S (PROS1), protein C (PROC) and antithrombin III (SERPINC1) Platelet disorders including Bernard Soulier Syndrome (GP1BA, GP1BB, GP9) and Glanzmann Thrombasthenia (ITGB3, ITGA2B)<\/li>\n<\/ul>\n\n\n\n<p>Testing methodologies include sanger sequencing, next generation sequencing, MLPA dosage kits and inversion analysis, as appropriate. In addition, a Bleeding &amp; Platelet gene panel provides testing for a range of coagulation related genetic disorders and is used for large genes and referrals with more than one candidate gene.<\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Other DNA tests<\/h4>\n\n\n\n<p>Clinical Genetics (0131 537 1116) should be consulted before requesting any test other than those noted in the previous section.<\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Other diagnostic laboratory tests<\/h4>\n\n\n\n<p>A number of other tests are available, either in our lab or&nbsp;<\/p>\n\n\n\n<p>those of other members of the&nbsp;<a href=\"https:\/\/services.nhslothian.scot\/geneticservice\/scottish-molecular-consortium-dna-tests\/\" data-type=\"page\" data-id=\"371\">Scottish Molecular Genetics Consortium<\/a>:&nbsp;<\/p>\n\n\n\n<p>The\u00a0<a href=\"https:\/\/www.genomics.nhs.scot\/test-directories\/rare-and-inherited-disease\/\" target=\"_blank\" rel=\"noreferrer noopener\">Scottish Test Directory for Rare and Inherited Disease<\/a>\u00a0lists all available tests including referral criteria and relevant requesting specialties.<\/p>\n\n\n\n<p>Other tests offered by UK&nbsp;labs participating in the&nbsp;<a href=\"https:\/\/www.england.nhs.uk\/publication\/national-genomic-test-directories\/\" target=\"_blank\" rel=\"noreferrer noopener\">National Genomic Test Directory<\/a><\/p>\n\n\n\n<p>or from other European accredited diagnostic labs may also be available.<\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Research laboratory tests<\/h4>\n\n\n\n<p>There is currently no NHS funding for DNA testing performed outside of registered diagnostic labs.&nbsp; The DNA lab is happy to extract and store DNA from any sample received:&nbsp; Any further processing must be discussed with the Head of Lab who will seek the opinion of Clinical Genetics before sending a sample away.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">Prenatal DNA testing<\/h3>\n\n\n\n<h4 class=\"wp-block-heading\">Rapid QF-PCR Trisomy Screen<\/h4>\n\n\n\n<p>The QF-PCR trisomy screen is the only prenatal DNA test directly available to regional clinicians and is undertaken in the Cytogenetics laboratory.&nbsp;&nbsp;&nbsp;A QF-PCR trisomy screen is available on solid tissue samples and is also undertaken by the Cytogenetics Laboratory.<\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Other prenatal tests<\/h4>\n\n\n\n<p>Prenatal testing for a number of other conditions is possible.&nbsp; Requests for all other tests are coordinated via Clinical Genetics:&nbsp; The ease of interpretation of genetic tests varies widely, as do the implications for individual(s) tested.&nbsp; In some cases, samples from the extended family need to be analysed to allow correct interpretation of results.<\/p>\n\n\n\n<p>The workup required for individual tests and families varies considerably, so the lab may require some advance warning even after a test request has been approved.&nbsp; Specimens from additional family members are often required and must have been tested before receipt of foetal sample.<\/p>\n\n\n\n<p><strong><br>Even for previously tested couples, advance notice of specimen collection is essential to allow the lab time to plan for the urgent test and its disruption factor.&nbsp;<\/strong>&nbsp;Couples known to be at high risk from previous testing who are attending for subsequent pregnancies should be notified to the lab at first booking appointment.<\/p>\n\n\n\n<p>When testing early in gestation is preferred, using CVB, please discuss in advance with the lab the amount of biopsy needed (range 2mg-20mg) which depends on the assays involved.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">DNA samples from Scottish Molecular Genetics Consortium (SMGC) laboratories<\/h3>\n\n\n\n<p>DNA samples are accepted from all SMGC laboratories for all our tests.&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Samples for DNA extraction only The DNA lab is happy to receive blood from any patient for DNA extraction for storage:&nbsp; DNA can be stored whether or not testing is available or considered appropriate at the time (see below).&nbsp; It is the responsibility of the referring clinician to ensure that appropriate consent has been obtained<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":47,"comment_status":"closed","ping_status":"closed","template":"page-templates\/widewidth.php","meta":{"footnotes":""},"categories":[],"class_list":["post-367","page","type-page","status-publish","hentry"],"rttpg_featured_image_url":null,"rttpg_author":{"display_name":"NHS Lothian","author_link":"https:\/\/services.nhslothian.scot\/geneticservice\/author\/nhs-lothian\/"},"rttpg_comment":0,"rttpg_category":false,"rttpg_excerpt":"Samples for DNA extraction only The DNA lab is happy to receive blood from any patient for DNA extraction for storage:&nbsp; DNA can be stored whether or not testing is available or considered appropriate at the time (see below).&nbsp; It is the responsibility of the referring clinician to ensure that appropriate consent has been obtained","_links":{"self":[{"href":"https:\/\/services.nhslothian.scot\/geneticservice\/wp-json\/wp\/v2\/pages\/367","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/services.nhslothian.scot\/geneticservice\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/services.nhslothian.scot\/geneticservice\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/services.nhslothian.scot\/geneticservice\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/services.nhslothian.scot\/geneticservice\/wp-json\/wp\/v2\/comments?post=367"}],"version-history":[{"count":3,"href":"https:\/\/services.nhslothian.scot\/geneticservice\/wp-json\/wp\/v2\/pages\/367\/revisions"}],"predecessor-version":[{"id":1263,"href":"https:\/\/services.nhslothian.scot\/geneticservice\/wp-json\/wp\/v2\/pages\/367\/revisions\/1263"}],"wp:attachment":[{"href":"https:\/\/services.nhslothian.scot\/geneticservice\/wp-json\/wp\/v2\/media?parent=367"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/services.nhslothian.scot\/geneticservice\/wp-json\/wp\/v2\/categories?post=367"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}